Step by Step the Baum-Welch Algorithm and its Application
نویسندگان
چکیده
منابع مشابه
Comparing the Bidirectional Baum-Welch Algorithm and the Baum-Welch Algorithm on Regular Lattice
A profile hidden Markov model (PHMM) is widely used in assigning protein sequences to protein families. In this model, the hidden states only depend on the previous hidden state and observations are independent given hidden states. In other words, in the PHMM, only the information of the left side of a hidden state is considered. However, it makes sense that considering the information of the b...
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This paper describes how we can use the generalized BaumWelch (GBW) algorithm to develop better extended BaumWelch (EBW) algorithms. Based on GBW, we show that the backoff term in the EBW algorithm comes from KL-divergence which is used as a regularization function. This finding allows us to develop a fast EBW algorithm, which can reduce the time of model space discriminative training by half, ...
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a profile hidden markov model (phmm) is widely used in assigning protein sequences to protein families. in this model, the hidden states only depend on the previous hidden state and observations are independent given hidden states. in other words, in the phmm, only the information of the left side of a hidden state is considered. however, it makes sense that considering the information of the b...
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ژورنال
عنوان ژورنال: IEICE ESS Fundamentals Review
سال: 2010
ISSN: 1882-0875
DOI: 10.1587/essfr.4.48